- Basic information
- CohesinDB ID: CDBP00418612
- Locus: chr21-36806802-36807079
-
Data sourse: GSE206145, GSE86191
-
Cell type: RPE, HCT-116
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: Rad21
-
CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TSS,TES
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: False
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
94% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"15_Quies": 81%,
"5_TxWk": 16%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: FOXO1, PGR, XBP1, HNF1A, FOXA1, PBX2, ZFHX2, ATF3, RUNX3, ZNF189, MITF, ZNF629, JMJD1C, ZNF121, LMO2, HNF1B, USF2, JUN, CTCF, MNT, E2F1, GLIS1, ZNF425, CHD8, POU2F2, ZNF263, POU5F1, RUNX1T1, MYCN, TOP2A, ZBTB48, ZSCAN5A, ERG2, MYC, GRHL3, PROX1, RCOR1, NR3C1, CEBPB, CREB1, EZH2, ZHX2, GATAD2B, MXD3, ZNF554, ATF1, RUNX1, CEBPA, ZFX, SMAD3, ERG3, RUNX2, ZNF184, ATF2, PRDM9, CDK8, USF1, BCL11A, ARID1A, ATF7, TCF3, SMC3, PPARG, TBL1X, CREM, ZNF600, ZNF692, WT1, YY1, RELA, SP140, ZIC2, HIF1A, MAX, ZNF143, HAND2, CEBPG, NFKB1, MYOD1, AR, PAX3-FOXO1, JUND, BRD4, MAZ, ZNF316
- Target gene symbol (double-evidenced CRMs): HLCS
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops