Deatailed information for cohesin site CDBP00418620


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  • Basic information
  • CohesinDB ID: CDBP00418620
  • Locus: chr21-36834392-36834822
  • Data sourse: GSE67783, ENCSR153HNT, GSE86191
  • Cell type: K-562, HCT-116, HSPC
  • DNA Sequence of binding site: UCSC hg38
  • Cohesin category
  • Peak occupancy ratio: 1% samples have this site.
  • Cell specificity (0: conserved, 1: cell type specific): 0.967
  • Subunit: SA1,Rad21
  • CTCF binding site: CTCF CTCF motif: False
  • Genomic location: Intragenic
  • 3D genome
  • TAD boundary: non-Boundary
  • Chromatin hubs: Hub
  • Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True
  • Compartment: 94% Hi-C samples shows Compartment A
  • Cis-regulatory elements
  • Enhancer (Fantom5): non-Enhancer
  • Super enhancer (SEdb): True
  • Chromatin annotation: "15_Quies": 74%, "5_TxWk": 20%,
    Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
  • Co-bound Transcriptional factors: RELA, ZNF133, CHD8, TBL1X, MYCN, ZFX, SP140, LMO2, XBP1, WT1, ZBTB48, IKZF1, SPI1, STAT1, MAZ, ERG3, EGR2, ERG2, ZFHX2
  • Target gene symbol (double-evidenced CRMs): HLCS
  • Function elements
  • Human SNPs: .
  • Number of somatic mutations (coding): 3
  • Number of somatic mutations (non-coding): 0
  • Related genes and loops

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