- Basic information
- CohesinDB ID: CDBP00418623
- Locus: chr21-36839182-36839526
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Data sourse: ENCSR000EFJ, ENCSR000HPG, ENCSR230ZWH, GSE206145
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Cell type: RPE, Liver, IMR-90
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: Mau2,SMC3,Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
94% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 64%,
"7_Enh": 20%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: GLIS1, TRP47, PGR, PPARG, FOXA2, NKX2-2, POU5F1, CEBPA, ZFX, NME2, XBP1, ZNF600, ZBTB48, FOXA1, ERG3, DDX5, CBX8, HOXB13, ERG, RELA, ATF3, RUNX2, MYC, SMARCA4, OSR2, RAD21, PRDM1, ARNT, RXRA, CBFB, OTX2, GATA3, ATF4, ATF2, SMARCE1, MAX, MAFB, NKX3-1, PAX5, RCOR1, NR3C1, CEBPB, CEBPG, EZH2, ESR1, FEZF1, ZNF334, USF2, CTCF, ZHX2, MAFK, BRD2, BHLHE40, AR, GATA2, ATF7, MXI1, BRD4, ILF3, PHIP, PRDM6, SMC3, ZNF34, PDX1
- Target gene symbol (double-evidenced CRMs): HLCS
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 6
- Number of somatic mutations (non-coding): 0
- Related genes and loops