- Basic information
- CohesinDB ID: CDBP00418624
- Locus: chr21-36841480-36843004
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Data sourse: GSE67783, GSE111913, GSE206145, ENCSR153HNT, GSE165895
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Cell type: RPE, RT-112, K-562, HSPC, HFFc6
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.944
- Subunit: NIPBL,SA1,Rad21,SMC1
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
94% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 77%,
"5_TxWk": 19%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: CHD8, FOXA2, ZFX, XBP1, SUZ12, HOXC5, ZNF19, RELA, MYC, RUNX2, CDK6, GRHL3, HIF1A, PBX4, DAXX, TAL1, PAX5, ZNF143, GATA1, RCOR1, NFE2, FOS, CDX2, NR3C1, CEBPB, NCOA3, TFAP2C, NEUROG2, OCA2, ZNF334, RBM22, USF1, MAFK, KLF1, GATA2, BRD4, ZNF316
- Target gene symbol (double-evidenced CRMs): HLCS
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 27
- Number of somatic mutations (non-coding): 0
- Related genes and loops