- Basic information
- CohesinDB ID: CDBP00418625
- Locus: chr21-36845165-36845740
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Data sourse: ENCSR153HNT, GSE86191
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Cell type: K-562, HCT-116
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1,Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
94% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 75%,
"5_TxWk": 20%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXO1, FOSL1, PGR, SMARCA2, HMG20A, ZSCAN5C, E2F7, ZNF660, FOXA1, MLL4, ATF3, ZC3H8, CHD7, PRDM1, SMARCE1, TP63, HDAC3, ZNF629, ZNF586, TEAD1, ETV1, KLF10, ESR1, TP73, CTCF, JUN, TCF12, BAF155, EP300, PYGO2, DPF2, SOX4, TEAD4, FOXA3, GATAD2A, PDX1, CHD8, ZNF263, MYCN, ID3, ZSCAN21, ZBTB17, ZNF317, ZSCAN5A, ZBTB48, GATAD1, SAP130, ARID3A, ZNF300, ERG, ZBTB21, MYC, ONECUT1, SMARCA4, RFX1, HOMEZ, RAD21, PROX1, NKX2-1, GABPA, STAT3, NKX3-1, RCOR1, ZNF639, NR3C1, ESRRA, CEBPB, CREB1, KLF8, GRHL2, TRPS1, GATA2, ZNF182, FLI1, MXI1, ZNF554, RUNX1, CEBPA, NKX2-2, ZFX, SMAD3, ZBTB12, ZNF792, SMARCC1, CREBBP, ZNF384, ZNF35, RARA, RUNX2, GATA4, ZNF184, ARNT, PBX4, ZEB2, PBX3, MAFB, ZNF10, FOS, CDK8, CHD1, MED1, TEAD3, ZEB1, SCRT2, ZMYM3, PIAS1, C11orf30, RBM22, MAFK, NIPBL, SP1, GSPT2, HNF4A, REST, ARID1A, RBM25, ZHX1, ASH2L, PHIP, BCOR, FOXP1, PRDM6, SMC3, STAG1, NFATC3, PPARG, FOXA2, CBX3, ZNF316, PAF1, ZNF600, WT1, MAFF, FOXF1, HOXB13, ZNF318, KDM1A, YY1, RELA, JUNB, BRG1, HIF1A, GATA3, TAL1, MAX, NRIP1, TLE3, SP7, NCOA3, ZKSCAN8, TCF7L2, TP53, PKNOX1, ZNF547, BRD2, ELF3, BHLHE40, AR, YAP1, EGLN2, ZBTB42, ZNF366, NCOR1, BRD4, JUND, CLOCK, CUX1, MAZ, ZSCAN23, AHR, FOSL2
- Target gene symbol (double-evidenced CRMs): HLCS
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 12
- Number of somatic mutations (non-coding): 0
- Related genes and loops