- Basic information
- CohesinDB ID: CDBP00418627
- Locus: chr21-36848318-36848558
-
Data sourse: GSE67783, GSE86191
-
Cell type: HCT-116, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1,Rad21
-
CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TSS,TES
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
94% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"15_Quies": 64%,
"5_TxWk": 31%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: TBL1X, NKX2-2, MYCN, POU5F1, ZFX, ZSCAN16, ZBTB17, WT1, ZBTB48, ZSCAN5A, FOXA1, ZNF205, TET2, XBP1, FOXF1, SMARCC1, YY1, RELA, ZNF35, ATF3, RUNX2, MYC, SMARCA4, SP140, GRHL3, HIF1A, PRDM1, NKX2-1, ZNF273, TAL1, STAT3, NKX3-1, ZNF143, PDX1, KLF5, SCRT2, NR2F1, ETV1, EZH2, ZNF334, JUN, CTCF, RBM22, ZNF211, NOTCH3, BRD4, PHIP, SCRT1, PRDM6, MAZ, SMC3, STAG1, TFAP2C
- Target gene symbol (double-evidenced CRMs): HLCS
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 6
- Number of somatic mutations (non-coding): 2
- Related genes and loops