- Basic information
- CohesinDB ID: CDBP00418632
- Locus: chr21-36858096-36861901
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Data sourse: ENCSR000BLD, ENCSR230ZWH, GSE72082, ENCSR501LQA, ENCSR150EFU, GSE105028, GSE73207, GSE25021, GSE108869, ENCSR000EDW, ENCSR000BUC, ENCSR917QNE, GSE165895, ENCSR000BTU, GSE67783, ENCSR000BKV, GSE86191, GSE138405, GSE76893, GSE101921, GSE206145-NatGen2015, GSE138105, ENCSR199XBQ, GSE106870, ENCSR895JMI, ENCSR000EEG, ENCSR338DUC, ENCSR193NSH, ENCSR768DOX, ENCSR879KXD, ENCSR000BLS, GSE206145, ENCSR000ECE, ENCSR247LSH, ENCSR981FDC, ENCSR620NWG, ENCSR635OSG, ENCSR748MVX, ENCSR767DFK, ENCSR984DZW, GSE97394, ENCSR217ELF, ENCSR167MTG, ENCSR853VWZ, ENCSR956LGB, GSE110061, GSE111913, ENCSR335RKQ, ENCSR054FKH, ENCSR000EDE, ENCSR153HNT, GSE68388, GSE126990, ENCSR000ECS, GSE38411
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Cell type: SLK, CVI-hiPSC, Liver, HuCC-T1, H9-hESC, RPE, HMEC, Fibroblast, Ishikawa, HeLa-S3, K-562, BCBL-1, HFFc6, H1-hESC, TF-1, RT-112, HUES64, Hela-Kyoto, HCT-116, Hep-G2, A-549, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 19% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.756
- Subunit: NIPBL,SA1,Rad21,SMC1,SA2,Mau2,SMC3
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
94% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"7_Enh": 34%,
"15_Quies": 32%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: NFIA, FOSL1, PGR, TRIM25, HMG20A, SOX2, MEIS2, XBP1, HNF1A, PATZ1, FOXA1, HLF, RBFOX2, RXRB, PBX2, MLL4, KDM3A, TFAP4, HNRNPK, HDGF, ATF3, THRB, NFIC, ZFP64, CTCFL, ZBTB44, PRDM1, IKZF3, MXD4, ZNF189, SMARCE1, CDX2, ZNF467, ZNF629, JMJD1C, KLF5, TEAD1, ELF1, ZNF586, KLF6, ETV1, NFE2L2, KLF10, RCOR2, ESR1, HNF1B, OCA2, MLL, SMAD5, JUN, TCF12, CTCF, EP300, BAF155, POU2F1, E4F1, KLF1, SOX5, DPF2, SOX4, PRDM4, RFX5, DDX20, E2F1, RFX3, TEAD4, FOXA3, ZNF175, KMT2B, GATAD2A, PDX1, MLX, RBPJ, TFAP2C, GLIS1, GTF2F1, POU2F2, CHD8, MYCN, POU5F1, TOP2A, ID3, ZSCAN21, ZBTB17, ZBTB48, STAT1, SRF, GATAD1, SAP130, ARID3A, SP4, TBP, HNF4G, HOXC5, ERG, SMARCC2, ETS1, ONECUT1, MYC, SMARCA4, ZBTB8A, HOMEZ, RAD21, ARID1B, GRHL3, EOMES, KLF12, RXRA, PROX1, NKX2-1, FOXK2, GABPA, STAT3, ZNF614, XRCC5, UBN1, MIER3, DNMT3B, NR2F6, RCOR1, HNRNPH1, VDR, NR3C1, CEBPB, ESRRA, NFE2, ZNF639, KMT2A, CREB1, EZH2, TBL1XR1, BMPR1A, GRHL2, FEZF1, ZNF652, GABPB1, PHF8, ZHX2, ELF4, SPI1, MIXL1, TFE3, HBP1, ZNF257, ZNF664, EHF, HDAC2, GATA2, IRF1, ZNF644, MXD3, ZNF146, FLI1, DRAP1, ZGPAT, NFIL3, NCOA2, MRTFB, ZNF554, NFYB, ETV5, PTBP1, RUNX1, THAP11, BCL6, SMC1A, CEBPA, HDAC1, LDB1, CRY1, SOX13, ZFX, FIP1L1, SIN3A, ZNF335, SMAD3, NKX2-2, TBX3, ERG3, SP5, SMARCC1, PRDM10, ZNF18, MYBL2, RARA, NFYC, ZNF384, ZNF35, ZBTB2, RUNX2, GATA4, OSR2, ZNF184, SP3, PBX4, ARNT, DAXX, NRF1, ZNF48, HMGB2, SMAD4, HMBOX1, NFYA, PBX3, ZEB2, SP2, FOS, HMGXB4, SMARCB1, CDK8, SUPT5H, MED1, CBFA2T3, CHD1, TEAD3, ZEB1, CEBPD, PML, DIDO1, ZXDB, SUPT16H, ZNF3, KLF9, RBM22, MAFK, SP1, NIPBL, BCL11A, HNF4A, IKZF5, REST, ZBTB7A, ZHX1, ASH2L, PHIP, FOXP1, PRDM6, SMC3, STAG1, STAG2, ETV4, SKI, NELFA, TRP47, CBFA2T2, PPARG, FOXA2, TBL1X, CREM, CBX3, CHD2, NFATC1, MIER2, ZNF600, WT1, MAFF, FOXF1, ZBTB33, TCF7, ZNF580, BCL3, FOXO3, KDM1A, YY1, RELA, HOXB13, JUNB, AHR, KAT2B, NEUROD1, ZNF282, T, SP140, TCF4, HIF1A, ZIC2, OTX2, GATA3, KLF15, TAL1, MAX, GATA1, ZNF143, CEBPG, ZFP69B, KLF4, SP7, NR2F2, NR2F1, KDM5B, TP53, ZNF547, NFKB1, MYOD1, PHOX2B, ELF3, PHF5A, KAT8, ARRB1, BRD2, ZNF843, ARID4B, NFKBIZ, AR, TAF1, ZBTB40, YAP1, ZBTB42, EGR1, ZBTB26, HSF1, RNF2, BRD4, JUND, ILF3, NOTCH3, CUX1, MAZ, CLOCK, SMAD4.1D12, ZNF24, DMAP1, FOSL2
- Target gene symbol (double-evidenced CRMs): HLCS,CHAF1B,SIM2
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 36
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000159259,
ENSG00000159263,
ENSG00000159267,
- Related loop:
chr21:36400000-36425000~~chr21:36850000-36875000,
chr21:36419354-36421097~~chr21:36853698-36855512,
chr21:36429053-36431122~~chr21:36860258-36861974,
chr21:36503297-36505649~~chr21:36853680-36855572,
chr21:36503500-36505460~~chr21:36853738-36855617,
chr21:36575000-36600000~~chr21:36850000-36875000,
chr21:36600000-36625000~~chr21:36850000-36875000,
chr21:36625000-36650000~~chr21:36850000-36875000,
chr21:36629999-36631989~~chr21:36853631-36855655,
chr21:36629999-36631990~~chr21:36853672-36855599,
chr21:36630020-36631673~~chr21:36853741-36855359,
chr21:36630022-36631930~~chr21:36853698-36855512,
chr21:36630041-36631980~~chr21:36853648-36855688,
chr21:36630061-36631975~~chr21:36853777-36855522,
chr21:36630079-36631909~~chr21:36853738-36855617,
chr21:36630079-36632006~~chr21:36853685-36855567,
chr21:36630135-36631927~~chr21:36853724-36855502,
chr21:36630184-36631672~~chr21:36853762-36855538,
chr21:36661133-36662988~~chr21:36853672-36855599,
chr21:36661203-36662789~~chr21:36853762-36855538,
chr21:36661239-36662859~~chr21:36853733-36855333,
chr21:36700000-36725000~~chr21:36850000-36875000,
chr21:36727406-36729008~~chr21:36853567-36855599,
chr21:36746609-36749083~~chr21:36853704-36855509,
chr21:36746841-36748820~~chr21:36853768-36855574,
chr21:36746942-36748770~~chr21:36853698-36855512,
chr21:36746964-36748885~~chr21:36853704-36855614,
chr21:36746970-36748653~~chr21:36853694-36855322,
chr21:36750000-36775000~~chr21:36850000-36875000,