- Basic information
- CohesinDB ID: CDBP00418637
- Locus: chr21-36879927-36880415
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Data sourse: ENCSR917QNE, ENCSR230ZWH, GSE72082, ENCSR000BLS
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Cell type: Liver, Hep-G2
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: Rad21
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
94% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 66%,
"5_TxWk": 24%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: BCL6, FOXA2, CEBPA, SOX13, ZFX, FOXA1, YY1, ZNF384, ZNF341, AHR, ARID1B, RAD21, ARNT, HIF1A, RXRA, NKX2-1, CEBPB, TEAD3, TEAD1, PIAS1, KDM5B, ZNF3, ESR1, SP1, HNF4A, NFIL3, FOXA3, GATAD2A, TFAP2C
- Target gene symbol (double-evidenced CRMs): HLCS
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 6
- Number of somatic mutations (non-coding): 0
- Related genes and loops