- Basic information
- CohesinDB ID: CDBP00418639
- Locus: chr21-36883024-36884645
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Data sourse: ENCSR501LQA, ENCSR760NPX, ENCSR150EFU, ENCSR000ECS, ENCSR330ELC, ENCSR000BUC, GSE138405, GSE76893, ENCSR806UKK, ENCSR895JMI, ENCSR193NSH, ENCSR768DOX, GSE206145, ENCSR981FDC, ENCSR247LSH, ENCSR807WAC, ENCSR620NWG, ENCSR767DFK, ENCSR495WGO, ENCSR984DZW, ENCSR217ELF, ENCSR853VWZ, ENCSR956LGB, ENCSR944ZCT, ENCSR676MJK, GSE111913, ENCSR335RKQ, ENCSR537EFT, ENCSR153HNT, GSE68388, ENCSR748MVX
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Cell type: RPE, Hela-Kyoto, A-549, HeLa-S3, RT-112, K-562, HuCC-T1
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 15% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.922
- Subunit: NIPBL,SA1,Rad21,SMC1,SA2,Mau2,SMC3
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
94% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 32%,
"5_TxWk": 27%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: XBP1, FOXA1, TFAP4, ZNF362, TEAD1, TRIM28, KLF6, SNAI2, NFE2L2, ESR1, JUN, TCF12, CTCF, EP300, GATA6, TRIM24, IRF4, RFX5, TEAD4, TFAP2C, ZSCAN5D, BRD3, ZNF317, HOXC5, MYC, ONECUT1, RAD21, GRHL3, GABPA, NFE2, NR3C1, ESRRA, CEBPB, ZNF93, CREB1, ZHX2, GATA2, FLI1, ZNF490, NFYB, SMC1A, CBX1, ZNF707, SIN3A, ZFX, SMAD3, ZNF384, RUNX2, ARNT, NRF1, DAXX, PBX4, SMARCB1, MED1, ZEB1, PIAS1, SETDB1, RBM22, MAFK, SP1, NIPBL, REST, ZNF479, GLIS2, SMC3, CBX3, FOXA2, WT1, HOXB13, BCL3, YY1, RELA, GATA3, BATF, MAX, KLF4, KDM5B, ZNF334, NFKB1, AR, TAF1, NCOR1, BRD4, JUND, MAZ, AHR, FOSL2
- Target gene symbol (double-evidenced CRMs): HLCS
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 6
- Number of somatic mutations (non-coding): 0
- Related genes and loops