- Basic information
- CohesinDB ID: CDBP00418641
- Locus: chr21-36888634-36889150
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Data sourse: ENCSR153HNT
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Cell type: K-562
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: SA1
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
94% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"5_TxWk": 55%,
"15_Quies": 33%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: CBFA2T2, HDAC1, MTA3, ZFX, CTBP1, ZSCAN16, ZNF600, WT1, DUX4, XBP1, ZSCAN5A, FOXA1, ZBTB33, ERG3, NBN, ERG2, MEF2C, ZFHX2, ZKSCAN1, KDM1A, RELA, HDGF, NEUROD1, RUNX2, SMARCA4, THAP1, ARID1B, RAD21, ZFP64, GRHL3, ARNT, HIF1A, KLF14, OTX2, CHD7, HMBOX1, ZNF189, TAL1, CBFA2T3, SMARCE1, MAX, GATA1, SUPT5H, RCOR1, NRIP1, NR2F6, ZNF143, MED1, NR3C1, ESRRA, NR2F2, ZNF26, NFE2L2, NCOA1, EGR2, TCF12, RBM22, BCL11A, KLF1, AR, GATA6, DPF2, HDAC2, ATF1, TRIM24, IRF4, EGR1, ZHX1, FLI1, NCOR1, JUND, SMARCA5, BCOR, BRD4, MRTFB, ZNF24, MLLT1
- Target gene symbol (double-evidenced CRMs): HLCS
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 6
- Number of somatic mutations (non-coding): 0
- Related genes and loops