- Basic information
- CohesinDB ID: CDBP00418643
- Locus: chr21-36898150-36898434
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Data sourse: GSE206145-NatGen2015, GSE86191
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Cell type: Fibroblast, HCT-116
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: Rad21,SA2
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
94% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"5_TxWk": 73%,
"15_Quies": 25%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: PAX3-FOXO1, RUNX1, NR3C1, CHD8, RUNX1T1, ZFX, ARNT, GRHL3, MLL, SMC3, GABPA, TAL1, ZIM3, SPI1
- Target gene symbol (double-evidenced CRMs): HLCS
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 6
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000159267,
- Related loop:
chr21:34350000-34375000~~chr21:36900000-36925000,
chr21:36125000-36150000~~chr21:36900000-36925000,
chr21:36400000-36425000~~chr21:36900000-36925000,
chr21:36475000-36500000~~chr21:36900000-36925000,
chr21:36500000-36525000~~chr21:36900000-36925000,
chr21:36575000-36600000~~chr21:36900000-36925000,
chr21:36625000-36650000~~chr21:36900000-36925000,
chr21:36650000-36675000~~chr21:36875000-36900000,
chr21:36650000-36675000~~chr21:36900000-36925000,
chr21:36675000-36700000~~chr21:36900000-36925000,
chr21:36700000-36725000~~chr21:36900000-36925000,
chr21:36725000-36750000~~chr21:36900000-36925000,
chr21:36750000-36775000~~chr21:36900000-36925000,