- Basic information
- CohesinDB ID: CDBP00418661
- Locus: chr21-36940753-36941319
-
Data sourse: GSE206145-NatGen2015, GSE67783, ENCSR153HNT
-
Cell type: K-562, Fibroblast, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: SA1,SA2
-
CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TSS,TES
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
94% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"5_TxWk": 86%,
"15_Quies": 12%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: GATA6, ZFX
- Target gene symbol (double-evidenced CRMs): CHAF1B,CBR3,SIM2,HLCS
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 9
- Number of somatic mutations (non-coding): 3
- Related genes and loops
- Related gene:
ENSG00000159231,
ENSG00000159259,
ENSG00000159263,
ENSG00000159267,
- Related loop:
chr21:36125000-36150000~~chr21:36925000-36950000,
chr21:36400000-36425000~~chr21:36925000-36950000,
chr21:36475000-36500000~~chr21:36925000-36950000,
chr21:36500000-36525000~~chr21:36925000-36950000,
chr21:36503662-36505206~~chr21:36938871-36940246,
chr21:36625000-36650000~~chr21:36925000-36950000,
chr21:36630131-36631967~~chr21:36938670-36940602,
chr21:36650000-36675000~~chr21:36925000-36950000,
chr21:36675000-36700000~~chr21:36925000-36950000,
chr21:36700000-36725000~~chr21:36925000-36950000,
chr21:36725000-36750000~~chr21:36925000-36950000,
chr21:36825000-36850000~~chr21:36925000-36950000,
chr21:36925000-36950000~~chr21:38350000-38375000,
chr21:36938297-36940389~~chr21:37009089-37011147,
chr21:36938603-36940392~~chr21:37009094-37011139,
chr21:36938603-36940392~~chr21:37581749-37583648,
chr21:36938657-36940545~~chr21:36989154-36991337,
chr21:36938657-36940545~~chr21:37641615-37643952,
chr21:36938709-36940332~~chr21:37009131-37010729,
chr21:36938714-36940414~~chr21:36965300-36967660,
chr21:36938795-36940479~~chr21:37009057-37010910,
chr21:36938850-36940337~~chr21:36965489-36966668,
chr21:36938850-36940337~~chr21:37086674-37088107,
chr21:36938878-36940353~~chr21:37009171-37010708,