- Basic information
- CohesinDB ID: CDBP00418673
- Locus: chr21-36969535-36969868
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Data sourse: GSE67783
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Cell type: HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: SA1
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: TSS
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
94% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 53%,
"5_TxWk": 43%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: NR3C1, TERF1, ZFX, ZBTB48, BRD4, RBFOX2, RBM22
- Target gene symbol (double-evidenced CRMs): VPS26C,DYRK1A,TTC3,HLCS
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 8
- Number of somatic mutations (non-coding): 4
- Related genes and loops
- Related gene:
ENSG00000159267,
ENSG00000182670,
ENSG00000157538,
ENSG00000157540,
- Related loop:
chr21:36938714-36940414~~chr21:36965300-36967660,
chr21:36938850-36940337~~chr21:36965489-36966668,
chr21:36950000-36975000~~chr21:37050000-37075000,
chr21:36950000-36975000~~chr21:37075000-37100000,
chr21:36950000-36975000~~chr21:37250000-37275000,
chr21:36950000-36975000~~chr21:37350000-37375000,
chr21:36950000-36975000~~chr21:37550000-37575000,