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Basic information

CohesinDB ID: CDBP00418689

Locus: chr21-36996016-36996897

Data sourse: GSE67783, ENCSR153HNT

Cell type: K-562, HSPC

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 0% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.978

Subunit: SA1

CTCF binding site: non-CTCF CTCF motif: False

Genomic location: TSS,TES

3D genome

TAD boundary: Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True

Compartment: 94% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): True

Chromatin annotation: "14_ReprPCWk": 54%, "15_Quies": 42%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: ZNF384, TEAD3, NCOA3, ZNF26, ZMYM3, MCM3, ZFX, ZBTB26, HIF1A, ZNF24, XBP1, FOXA1, ZNF48, CTCF, SPI1, NFKBIZ

Target gene symbol (double-evidenced CRMs): KCNJ6,DYRK1A,VPS26C,TTC3

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 6

Related genes and loops

Related gene: ENSG00000182670, ENSG00000157538, ENSG00000157540, ENSG00000157542,

Tools:

Assay

refGene

Ruler

Cohesin site CDBP00418689

CDBP00418689 regulated genes

Related cohesin loop

Deatailed information for cohesin site CDBP00418689

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