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Basic information

CohesinDB ID: CDBP00418692

Locus: chr21-37002761-37003054

Data sourse: GSE67783

Cell type: HSPC

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 0% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.989

Subunit: SA1

CTCF binding site: CTCF CTCF motif: False

Genomic location: TSS

3D genome

TAD boundary: Boundary

Chromatin hubs: Hub

Hi-C loops: False Hi-ChIP loops: False ChIA-PET loops: True

Compartment: 90% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): True

Chromatin annotation: "14_ReprPCWk": 64%, "15_Quies": 29%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: THAP11, CEBPA, EZH2phosphoT487, ZNF263, ZFX, ZNF770, TCF7, PRDM10, ZNF384, ZNF362, HOMEZ, ATF4, OTX2, SMAD4, NR2F6, CEBPG, CEBPB, TEAD3, TEAD1, ZNF121, ZMYM3, TBX5, CTCF, PHIP, NFIL3

Target gene symbol (double-evidenced CRMs): .

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 0

Related genes and loops

Related gene:

eachgene

Deatailed information for cohesin site CDBP00418692