- Basic information
- CohesinDB ID: CDBP00418697
- Locus: chr21-37014041-37014363
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Data sourse: GSE206145-NatGen2015, GSE67783
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Cell type: Fibroblast, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1,SA2
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: False
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
90% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"14_ReprPCWk": 54%,
"15_Quies": 42%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXA2, ZNF121, ZFP64, ZNF184, MCM3, ZFX, NME2, GRHL3, BRD4, FOXF1, FOXA1, CBFA2T3, MAFK, ZNF316, ZBTB20
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
- Related loop:
chr21:36629967-36632038~~chr21:37009098-37011099,
chr21:36630079-36631909~~chr21:37009057-37010910,
chr21:36938297-36940389~~chr21:37009089-37011147,
chr21:36938603-36940392~~chr21:37009094-37011139,
chr21:36938709-36940332~~chr21:37009131-37010729,
chr21:36938795-36940479~~chr21:37009057-37010910,
chr21:36938878-36940353~~chr21:37009171-37010708,
chr21:36976114-36978430~~chr21:37009040-37011094,
chr21:36976280-36978448~~chr21:37009094-37011139,
chr21:36976388-36978333~~chr21:37009080-37011137,
chr21:36976392-36978397~~chr21:37009089-37011147,
chr21:36976394-36978416~~chr21:37009250-37011101,
chr21:36976407-36978411~~chr21:37009056-37011247,
chr21:36976409-36978425~~chr21:37009116-37011027,
chr21:36976410-36978425~~chr21:37009307-37011128,
chr21:36976414-36978490~~chr21:37009170-37010886,
chr21:36976420-36977983~~chr21:37009274-37010871,
chr21:36976420-36978300~~chr21:37009165-37010905,
chr21:36976420-36978406~~chr21:37009183-37010907,
chr21:36976425-36978091~~chr21:37009147-37011170,
chr21:36976435-36978463~~chr21:37009096-37011260,
chr21:36976463-36978161~~chr21:37009171-37010708,
chr21:36976463-36978487~~chr21:37009057-37010910,