- Basic information
- CohesinDB ID: CDBP00418718
- Locus: chr21-37058503-37058789
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Data sourse: GSE67783, ENCSR153HNT, GSE86191
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Cell type: K-562, HCT-116, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: SA1,Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: TES
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
90% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 49%,
"7_Enh": 23%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: PGR, ZSCAN5C, SOX2, MEIS2, XBP1, FOXA1, RXRB, PBX2, ZNF28, PRDM1, MZF1, ZNF467, JMJD1C, TRIM28, LMO2, ESR1, OCA2, ZNF77, PITX3, MLL, USF2, CTCF, TCF12, EP300, GATA6, SOX5, TRIM24, TEAD4, FOXA3, GATAD2A, TFAP2C, RBPJ, POU2F2, NANOG, MYCN, POU5F1, RUNX1T1, TOP2A, DUX4, ZSCAN5A, ZBTB48, SAP130, ZNF485, ZNF300, ERG, MYC, RAD21, GRHL3, RXRA, RCOR1, NR2F6, NR3C1, ESRRA, CEBPB, KMT2A, CREB1, EZH2, ZNF652, EBF3, SPI1, MIXL1, HDAC2, GATA2, ZNF644, FLI1, NFIL3, ETV5, CC2D1A, RUNX1, CBX1, BCL6, CEBPA, SOX13, ZFX, SP5, SMARCC1, RARA, CDK6, SOX11, PRDM9, CDK8, TEAD3, MYB, ZNF680, L3MBTL2, SETDB1, ZNF22, BCL11A, PHIP, TCF3, FOXP1, SMC3, STAG1, ZNF316, FOXA2, CHD2, MIER2, ZNF30, WT1, MEF2C, HOXB13, KDM1A, YY1, RELA, CHAMP1, ISL1, SP140, HIF1A, GATA3, TAL1, MAX, MAF1, NRIP1, GATA1, HAND2, KLF4, NR2F2, ZNF334, PHOX2B, AR, PAX3-FOXO1, EGLN2, NOTCH3, BRD4, MAZ, TBX2, AHR
- Target gene symbol (double-evidenced CRMs): DYRK1A,SIM2,HLCS,VPS26C
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 1
- Related genes and loops