- Basic information
- CohesinDB ID: CDBP00418722
- Locus: chr21-37066951-37067057
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Data sourse: GSE120943, GSE98367
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Cell type: Monocytes, Macrophage
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SMC1
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: TES
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
90% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"5_TxWk": 66%,
"4_Tx": 22%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: NFATC3, RUNX1, TRP47, CBFA2T2, PGR, CHD8, FOXA2, NKX2-2, FIP1L1, ZNF534, ZNF600, ZNF317, SOX2, ZBTB48, ZBTB17, PAF1, XBP1, FOXA1, NME2, RBFOX2, HOXB13, TWIST1, PRDM10, ERG, YY1, HNF4G, ZNF384, OGG1, BMI1, SMARCA4, RFX1, ZNF184, CHD7, GR, GATA4, SP140, GRHL3, PRDM1, GABPA, ZSCAN4, NKX3-1, SUPT5H, AGO2, ZNF143, RCOR1, HAND2, ZNF639, FOS, HDAC3, NR3C1, CEBPB, TLE3, TEAD1, TP53, ESR1, PITX3, GRHL2, PHOX2B, TCF12, RBM22, EP300, SPI1, BAF155, BHLHE40, AR, KLF17, PAX8, HDAC2, GATA2, ZNF479, RFX5, FLI1, MYNN, ASH2L, BRD4, FOXP1, RFX3, ZSCAN23
- Target gene symbol (double-evidenced CRMs): SIM2,DYRK1A,HLCS,VPS26C
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 30
- Number of somatic mutations (non-coding): 6
- Related genes and loops
- Related gene:
ENSG00000159263,
ENSG00000159267,
ENSG00000157538,
ENSG00000157540,
- Related loop:
chr21:34350000-34375000~~chr21:37050000-37075000,
chr21:36725000-36750000~~chr21:37050000-37075000,
chr21:36950000-36975000~~chr21:37050000-37075000,
chr21:36989121-36991424~~chr21:37071179-37074846,
chr21:37050000-37075000~~chr21:37250000-37275000,
chr21:37050000-37075000~~chr21:37525000-37550000,