- Basic information
- CohesinDB ID: CDBP00418724
- Locus: chr21-37076784-37077014
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Data sourse: GSE67783, ENCSR153HNT
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Cell type: K-562, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TSS
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
90% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 50%,
"5_TxWk": 36%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: THAP11, PPARG, CEBPA, FOXA2, CBX3, TOP2A, SOX13, SOX2, CHD2, FOXA1, GATAD1, SAP130, ARID3A, RXRB, TRIM22, TWIST1, HNF4G, KDM1A, ERG, RARA, MEN1, ONECUT1, ZNF184, HOMEZ, ZFP36, OTX2, GATA3, TCF12, ZNF143, NUP98-HOXA9, RCOR1, NR2F6, HAND2, CEBPG, TEAD1, TERF1, ZMYM3, RCOR2, ZNF217, ZNF3, SETDB1, EBF3, PHOX2B, PHF5A, ELF3, KAT8, SP1, SPI1, MIXL1, HNF4A, NR4A1, SOX5, AR, ARID4B, TBX21, EP300, RBM25, ASH2L, ZGPAT, FOXP1, NFIL3, TEAD4, FOXA3, GATAD2A, MLLT1
- Target gene symbol (double-evidenced CRMs): TTC3,CHAF1B,HLCS
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000159259,
ENSG00000159267,
ENSG00000182670,
- Related loop:
chr21:34350000-34375000~~chr21:37050000-37075000,
chr21:36400000-36425000~~chr21:37075000-37100000,
chr21:36725000-36750000~~chr21:37050000-37075000,
chr21:36950000-36975000~~chr21:37050000-37075000,
chr21:36950000-36975000~~chr21:37075000-37100000,
chr21:36975000-37000000~~chr21:37075000-37100000,
chr21:36976280-36978448~~chr21:37078697-37080394,
chr21:36976416-36978177~~chr21:37079107-37080371,
chr21:36989121-36991424~~chr21:37071179-37074846,
chr21:36999877-37001750~~chr21:37078770-37080416,
chr21:36999885-37001435~~chr21:37078647-37080436,
chr21:36999930-37001432~~chr21:37078697-37080394,
chr21:37050000-37075000~~chr21:37250000-37275000,
chr21:37050000-37075000~~chr21:37525000-37550000,
chr21:37078878-37080096~~chr21:37582024-37583384,