- Basic information
- CohesinDB ID: CDBP00418725
- Locus: chr21-37078520-37078699
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Data sourse: GSE62063
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Cell type: Ramos
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: NIPBL
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
90% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"15_Quies": 54%,
"5_TxWk": 36%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: PHOX2B, TOP2A
- Target gene symbol (double-evidenced CRMs): HLCS,CHAF1B,TTC3
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000159259,
ENSG00000159267,
ENSG00000182670,
- Related loop:
chr21:34350000-34375000~~chr21:37050000-37075000,
chr21:36400000-36425000~~chr21:37075000-37100000,
chr21:36725000-36750000~~chr21:37050000-37075000,
chr21:36950000-36975000~~chr21:37050000-37075000,
chr21:36950000-36975000~~chr21:37075000-37100000,
chr21:36975000-37000000~~chr21:37075000-37100000,
chr21:36976280-36978448~~chr21:37078697-37080394,
chr21:36976416-36978177~~chr21:37079107-37080371,
chr21:36989121-36991424~~chr21:37071179-37074846,
chr21:36999877-37001750~~chr21:37078770-37080416,
chr21:36999885-37001435~~chr21:37078647-37080436,
chr21:36999930-37001432~~chr21:37078697-37080394,
chr21:37050000-37075000~~chr21:37250000-37275000,
chr21:37050000-37075000~~chr21:37525000-37550000,
chr21:37078878-37080096~~chr21:37582024-37583384,