- Basic information
- CohesinDB ID: CDBP00418727
- Locus: chr21-37081855-37082126
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Data sourse: GSE206145, GSE206145-NatGen2015
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Cell type: RPE, Fibroblast
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1,Rad21,SA2
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
90% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 53%,
"5_TxWk": 41%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: HMG20A, FOXA1, HDGF, MEN1, ZNF362, ZNF444, ATF4, SMARCE1, PAX5, JMJD1C, TRIM28, ZNF26, ESR1, CTCF, TCF12, MNT, DPF2, SMC1, GATAD2A, POU5F1, TOP2A, ZSCAN21, MTA2, DUX4, ZBTB48, SRF, NBN, ARID3A, BAHD1, MIER1, OGG1, MYC, SMARCA4, ARID1B, HOMEZ, RAD21, DNMT1, IKZF1, MIER3, RCOR1, ZNF639, NR3C1, CEBPB, SPI1, MIXL1, ZNF664, TFE3, HDAC2, GATA2, SMARCA5, ZNF766, CC2D1A, RUNX1, BCL6, SMC1A, HDAC1, CEBPA, ZNF770, TRIM22, CREBBP, ZNF384, ZBTB2, ZNF184, ARNT, ZEB2, HMBOX1, SUPT5H, CDK8, ZNF558, MYB, CEBPD, ZMYM3, C11orf30, NCOA1, SETDB1, BCL11A, NR4A1, ASH2L, BCOR, SMC3, MLLT1, MEF2B, PPARG, E2F8, ZBTB33, CDK9, ZNF318, KDM1A, OTX2, TAL1, GATA1, SP7, ZNF512, PKNOX1, PHOX2B, ELF3, PHF5A, ZFP28, ZBTB40, ZNF324, HSF1, RNF2, NCOR1, BRD4, ZNF24, ZNF316
- Target gene symbol (double-evidenced CRMs): TTC3,HLCS,CHAF1B
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 4
- Number of somatic mutations (non-coding): 1
- Related genes and loops
- Related gene:
ENSG00000159259,
ENSG00000159267,
ENSG00000182670,
- Related loop:
chr21:36400000-36425000~~chr21:37075000-37100000,
chr21:36938850-36940337~~chr21:37086674-37088107,
chr21:36950000-36975000~~chr21:37075000-37100000,
chr21:36975000-37000000~~chr21:37075000-37100000,
chr21:36976114-36978430~~chr21:37086465-37088179,
chr21:36976280-36978448~~chr21:37078697-37080394,
chr21:36976280-36978448~~chr21:37086131-37087976,
chr21:36976394-36978416~~chr21:37086094-37088173,
chr21:36976402-36978434~~chr21:37086106-37088263,
chr21:36976404-36978374~~chr21:37086393-37088124,
chr21:36976407-36978411~~chr21:37086055-37088195,
chr21:36976416-36978177~~chr21:37079107-37080371,
chr21:36976420-36978417~~chr21:37086403-37088182,
chr21:36976426-36978435~~chr21:37086473-37087963,
chr21:36976427-36978248~~chr21:37086150-37088199,
chr21:36976430-36978401~~chr21:37086077-37088227,
chr21:36976435-36978463~~chr21:37086055-37088213,
chr21:36989316-36991217~~chr21:37086306-37088100,
chr21:36999877-37001750~~chr21:37078770-37080416,
chr21:36999885-37001435~~chr21:37078647-37080436,
chr21:36999930-37001432~~chr21:37078697-37080394,
chr21:36999934-37001381~~chr21:37086150-37088199,
chr21:37078878-37080096~~chr21:37582024-37583384,