- Basic information
- CohesinDB ID: CDBP00418735
- Locus: chr21-37098838-37099047
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Data sourse: GSE116344, GSE83726
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Cell type: RH4
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: TSS,TES
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
90% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"4_Tx": 74%,
"5_TxWk": 18%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: ZNF283, CHD8, PAF1, XBP1, LEO1, RELA, NEUROD1, MYC, RAD21, GRHL3, TCF4, ZNF532, OTX2, SUPT5H, ZNF143, MED1, CEBPB, MYOG, NEUROG2, MYOD1, RBM22, BRD4, ZNF766, BRCA1, EED
- Target gene symbol (double-evidenced CRMs): TTC3,CHAF1B,HLCS
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops