- Basic information
- CohesinDB ID: CDBP00418736
- Locus: chr21-37101834-37102036
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Data sourse: GSE62063
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Cell type: Ramos
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: NIPBL
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: TSS,TES
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: non-Hub
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Hi-C loops: False
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
90% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"5_TxWk": 83%,
"15_Quies": 12%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX1, PAX7, CTNNB1, POU2F2, CEBPA, POU5F1, FOXA2, TOP2A, PAF1, SOX2, RUNX1T1, ZFX, E2F8, WT1, MAFF, ZSCAN16, FOXA1, HLF, LEO1, HOXB13, ERG, HNRNPK, KDM1A, RELA, ZBTB2, MYC, GATA4, RAD21, PRDM1, ARNT, GRHL3, SP140, TAL1, STAT3, SUPT5H, AGO2, KLF4, TERF1, TRIM28, KMT2A, MYB, NEUROG2, TEAD1, ZNF791, LMO2, CTCF, RBM22, TCF12, SPI1, BCL11A, JUN, NR4A1, AR, GATA6, MAFK, GATA2, FLI1, ILF3, TCF3, SMC3, ZNF316
- Target gene symbol (double-evidenced CRMs): TTC3
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops