- Basic information
- CohesinDB ID: CDBP00418737
- Locus: chr21-37107876-37108085
-
Data sourse: GSE206145-NatGen2015, ENCSR153HNT
-
Cell type: K-562, Fibroblast
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1
-
CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: non-Hub
-
Hi-C loops: False
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
90% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"5_TxWk": 71%,
"9_Het": 11%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: POU2F2, CHD8, BCL6, ZSCAN5D, CEBPA, POU5F1, TOP2A, PAF1, E2F8, NFATC1, ZFX, CBX3, SMAD3, DUX4, ZNF317, FOXA1, SOX2, MAFF, ZBTB33, GTF2B, LEO1, HOXB13, BCL3, HNRNPK, KDM1A, RELA, ZNF585B, ZNF384, HDGF, JUNB, RUNX2, CDK6, MYC, GATA4, HOMEZ, RAD21, PRDM1, ZNF48, STAT3, TP63, NKX3-1, FOS, SUPT5H, AGO2, SFPQ, ZNF467, CEBPG, CEBPB, BCLAF1, TRIM28, CREB1, PIAS1, RCOR2, TP53, TP73, C11orf30, MAFG, ZNF140, CTCF, RBM22, JUN, NIPBL, MAFK, ZNF664, HNF4A, AR, FOXA2, PAX8, GATA2, ZNF644, EGLN2, ASH2L, MYNN, DRAP1, BRD4, ZNF528, MAZ, SMC3, ZNF316, GATAD2A, AHR, EED
- Target gene symbol (double-evidenced CRMs): TTC3
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 8
- Number of somatic mutations (non-coding): 0
- Related genes and loops