- Basic information
- CohesinDB ID: CDBP00418738
- Locus: chr21-37109143-37109961
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Data sourse: GSE67783, GSE86191, GSE111913, GSE105028, GSE206145-NatGen2015, ENCSR153HNT
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Cell type: Fibroblast, HCT-116, RT-112, K-562, HSPC, H9-hESC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 2% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.933
- Subunit: SA1,Rad21,SMC1
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: non-Hub
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Hi-C loops: False
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
90% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"5_TxWk": 50%,
"8_ZNF/Rpts": 22%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: NANOG, POU2F2, FOXA2, PAF1, ZFX, XBP1, FOXA1, ERG3, HOXB13, TBP, YY1, RELA, CREBBP, USP7, ETV6, ZNF143, SUPT5H, TRIM28, MYB, ZNF680, EZH2, SETDB1, MYOD1, CTCF, RBM22, SPI1, ZBTB26, BRD4
- Target gene symbol (double-evidenced CRMs): TTC3
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 24
- Number of somatic mutations (non-coding): 0
- Related genes and loops