- Basic information
- CohesinDB ID: CDBP00418740
- Locus: chr21-37117306-37117732
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Data sourse: ENCSR054FKH, GSE72082, ENCSR000BLS
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Cell type: Hep-G2
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: non-Hub
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Hi-C loops: False
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
90% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"5_TxWk": 75%,
"15_Quies": 13%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: NFIA, FOSL1, HMG20A, LCORL, HNF1A, FOXA1, RXRB, KDM3A, ATF3, NFIC, THRB, ZNF362, RUNX3, MXD4, ZNF189, MITF, TEAD1, BCLAF1, KLF6, RCOR2, HNF1B, JUN, EP300, SOX5, IRF4, TEAD4, FOXA3, ZNF175, GATAD2A, PDX1, RBPJ, MLX, CHD8, GATAD1, SAP130, ARID3A, TBP, HNF4G, MYC, ARID1B, HOMEZ, RAD21, RXRA, NKX2-1, ZNF614, MIER3, NR2F6, CEBPB, CREB1, GRHL2, ZNF652, GABPB1, TFE3, MIXL1, IRF1, HDAC2, ZNF644, DRAP1, ZGPAT, NFIL3, ETV5, THAP11, BCL6, CEBPA, SOX13, SMAD3, TBX3, SP5, SMARCC1, MYBL2, RARA, NFYC, ZNF384, ZNF184, PBX4, DAXX, SMAD4, SMARCB1, SUPT5H, FOS, HMGXB4, TEAD3, ZEB1, SUPT16H, ZNF3, RBM22, MAFK, BCL11A, SP1, HNF4A, IKZF5, ASH2L, FOXP1, SMC3, SKI, PPARG, FOXA2, CREM, EBF1, MIER2, MAFF, TCF7, HOXB13, ZNF580, KDM1A, JUNB, AHR, BATF, MAX, CEBPG, NR2F2, ELF3, PHF5A, KAT8, ARID4B, AR, NFKBIZ, ZBTB40, ZBTB26, JUND, CLOCK, ZNF24, DMAP1, FOSL2
- Target gene symbol (double-evidenced CRMs): TTC3
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops