- Basic information
- CohesinDB ID: CDBP00418742
- Locus: chr21-37126919-37127238
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Data sourse: GSE67783
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Cell type: HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: SA1
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: non-Hub
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Hi-C loops: False
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
90% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"4_Tx": 66%,
"5_TxWk": 30%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: PGR, CHD8, ZFX, SMAD3, FOXA1, ERG, CREBBP, USP7, CDK2, MYC, CDK6, ARNT, HIF1A, NRF1, NKX2-1, GATA3, GABPA, STAT3, MAX, NRIP1, SUPT5H, NKX3-1, ZNF750, ESRRA, KLF4, NCOA3, CREB1, KDM5B, EZH2, ESR1, OCA2, GRHL2, TRPS1, RBM22, MAFK, SPI1, BAF155, EP300, AR, EGLN2, ASH2L, BRD4, CTBP2, ZNF528
- Target gene symbol (double-evidenced CRMs): TTC3
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 12
- Number of somatic mutations (non-coding): 0
- Related genes and loops