- Basic information
- CohesinDB ID: CDBP00418752
- Locus: chr21-37159050-37159484
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Data sourse: GSE50893, ENCSR000DZP, ENCSR000BMY, ENCSR153HNT
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Cell type: GM2610, GM12878, K-562, GM2588
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.956
- Subunit: SMC3,Rad21,SA1
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
90% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"4_Tx": 51%,
"5_TxWk": 30%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOSL1, PGR, MEIS2, XBP1, FOXA1, PBX2, HDGF, NFIC, RUNX3, ZNF532, CBFB, SMARCE1, PAX5, ZNF320, MAF, TEAD1, TRIM28, BCLAF1, ELF1, USF2, CTCF, TCF12, EP300, NUTM1, E4F1, MNT, BAF155, DPF2, PAX8, TRIM24, IRF4, SOX6, RAD51, TEAD4, EHMT2, EED, POU2F2, CHD8, TOP2A, ID3, CTBP1, MTA2, SRF, DDX5, NBN, ARID3A, TBP, ERG, SMARCC2, NFKB2, MYC, SMARCA4, ARID1B, RAD21, HOMEZ, BATF3, GABPA, SOX10, NKX3-1, IKZF1, LEF1, RCOR1, NR3C1, STAT5B, CREB1, EBF3, SPI1, HDAC2, GATA2, RELB, SMC1A, HDAC1, NKX2-2, EZH2phosphoT487, ZFX, TRIM22, ZBTB2, CDK6, GATA4, ARNT, BACH1, ZEB2, CBFA2T3, FOXM1, ETV6, SUPT5H, MED1, ZNF680, PIAS1, C11orf30, STAT5A, RBM22, MAFK, SP1, BCL11A, ATF7, ASH2L, MLLT1, NFATC3, CBFA2T2, PPARG, FOXA2, MTA3, EBF1, CREM, PAF1, GTF2B, ZBED1, MAFF, ZNF823, CDK9, YY1, RELA, TARDBP, JUNB, CHAMP1, HIF1A, SKIL, BATF, TAL1, MAX, GATA1, ZNF592, GFI1B, NCOA3, NR2F1, NEUROG2, ZNF687, PKNOX1, NFKB1, BHLHE40, AR, TAF1, RNF2, NCOR1, BRD4, ILF3, JUND, IKZF2, NOTCH3, ZNF24, ZNF316
- Target gene symbol (double-evidenced CRMs): TTC3,VPS26C,DYRK1A,KCNJ6
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000182670,
ENSG00000157538,
ENSG00000157540,
ENSG00000157542,
- Related loop:
chr21:33500000-33525000~~chr21:37150000-37175000,
chr21:37150000-37175000~~chr21:37250000-37275000,
chr21:37150000-37175000~~chr21:37275000-37300000,
chr21:37150000-37175000~~chr21:37350000-37375000,
chr21:37150000-37175000~~chr21:37375000-37400000,
chr21:37150000-37175000~~chr21:37450000-37475000,
chr21:37150000-37175000~~chr21:37500000-37525000,
chr21:37150000-37175000~~chr21:37575000-37600000,
chr21:37150000-37175000~~chr21:37625000-37650000,
chr21:37150000-37175000~~chr21:37650000-37675000,
chr21:37150000-37175000~~chr21:37900000-37925000,
chr21:37150000-37175000~~chr21:38150000-38175000,
chr21:37150000-37175000~~chr21:38325000-38350000,
chr21:37150000-37175000~~chr21:38350000-38375000,