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Basic information

CohesinDB ID: CDBP00418753

Locus: chr21-37161265-37161843

Data sourse: GSE62063, GSE67783

Cell type: HSPC, Ramos

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 0% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.978

Subunit: NIPBL,SA1

CTCF binding site: CTCF CTCF motif: False

Genomic location: Intragenic

3D genome

TAD boundary: Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True

Compartment: 90% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): True

Chromatin annotation: "5_TxWk": 51%, "4_Tx": 47%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: CDX2, PAX8, OGG1, NUP98-HOXA9, PAF1, ZFX, SOX2, ZNF532, ZSCAN5A, BRD4, ATF2, FOXA1, DUX4, TAL1, ZZZ3, PHOX2B, RXRA, RBM22, SUPT5H, NUTM1

Target gene symbol (double-evidenced CRMs): DYRK1A,VPS26C,TTC3,KCNJ6

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 0

Related genes and loops

Related gene: ENSG00000182670, ENSG00000157538, ENSG00000157540, ENSG00000157542,

eachgene

Deatailed information for cohesin site CDBP00418753