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Basic information

CohesinDB ID: CDBP00418756

Locus: chr21-37169450-37169719

Data sourse: GSE67783, ENCSR153HNT

Cell type: K-562, HSPC

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 0% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.978

Subunit: SA1

CTCF binding site: CTCF CTCF motif: False

Genomic location: Intragenic

3D genome

TAD boundary: Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True

Compartment: 90% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): False

Chromatin annotation: "5_TxWk": 64%, "4_Tx": 33%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: RUNX1, PAX7, CHD8, FOXA2, EBF1, TOP2A, ZNF317, ZBTB17, ZSCAN16, XBP1, DUX4, FOXA1, FOXF1, GTF2B, CDK9, HOXB13, ERG, KDM1A, CREBBP, ZNF384, OGG1, ATF3, MYC, CDK6, SMARCA4, ZNF362, GRHL3, ZNF532, GATA3, GABPA, STAT3, NKX3-1, SUPT5H, GATA1, CEBPB, STAT5A, PHOX2B, RBM22, BCL11A, SPI1, NUTM1, AR, PAX8, GATA2, BRD4, RBPJ, EED

Target gene symbol (double-evidenced CRMs): DYRK1A,TTC3,KCNJ6,VPS26C

Function elements

Human SNPs: .

Number of somatic mutations (coding): 6

Number of somatic mutations (non-coding): 2

Related genes and loops

Related gene: ENSG00000182670, ENSG00000157538, ENSG00000157540, ENSG00000157542,

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Deatailed information for cohesin site CDBP00418756