- Basic information
- CohesinDB ID: CDBP00418759
- Locus: chr21-37181038-37181527
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Data sourse: GSE116344, ENCSR153HNT
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Cell type: K-562, RH4
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1,Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
90% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"4_Tx": 50%,
"5_TxWk": 42%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOSL1, PGR, E2F7, SOX2, XBP1, FOXA1, ATF3, ZNF532, ZNF189, ZNF736, ESR1, OCA2, USF2, CTCF, BAF155, NUTM1, IRF4, E2F4, E2F1, ZNF528, TFAP2C, NANOG, CHD8, POU2F2, TOP2A, RUNX1T1, ZSCAN21, ZNF317, ZBTB48, ZNF300, ERG, ETS1, MYC, EZH1, RAD21, GRHL3, STAT3, NKX3-1, CREB1, EZH2, KLF8, FEZF1, KDM5A, IRF1, GATA2, RELB, RUNX1, SIN3A, ZFX, ZNF18, PRDM10, ZNF35, ZNF384, ZNF133, RUNX2, GATA4, OSR2, ARNT, SUPT5H, CDK8, MED1, ZXDB, SCRT2, PIAS1, ZNF331, TBX5, RBM22, GSPT2, FOXP1, PRDM6, SMC3, PPARG, FOXA2, ZSCAN16, GTF2B, WT1, ZNF692, CDK9, HOXB13, RELA, JUNB, TCF4, HIF1A, OTX2, BATF, ZNF143, GATA1, TLE3, NCOA3, ZNF687, ZNF334, ELF3, ZNF843, AR, PAX3-FOXO1, EGLN2, EGR1, BRD4, SCRT1, ZNF440, ZNF24
- Target gene symbol (double-evidenced CRMs): KCNJ6,TTC3
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops