- Basic information
- CohesinDB ID: CDBP00418760
- Locus: chr21-37184532-37185430
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Data sourse: GSE50893, ENCSR000DZP, GSE67783
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Cell type: GM12878, HSPC, GM2588
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: SMC3,SA1
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: TES
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
90% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"5_TxWk": 56%,
"4_Tx": 42%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX1, SMC1A, POU5F1, XBP1, FOXA1, TRIM22, HOXB13, ERG, YY1, RELA, HDGF, TARDBP, ZBTB2, JUNB, MYC, RUNX3, ARNT, SKIL, HIF1A, BATF3, BATF, GLYR1, PAX5, NKX3-1, SUPT5H, TERF2, BCLAF1, EZH2, PKNOX1, RBM22, SPI1, NUTM1, BHLHE40, AR, GATA2, IRF4, ATF7, ASH2L, BRD4, FOXP1, RELB, MLLT1, RBPJ
- Target gene symbol (double-evidenced CRMs): TTC3,KCNJ6
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 3
- Number of somatic mutations (non-coding): 1
- Related genes and loops