- Basic information
- CohesinDB ID: CDBP00418761
- Locus: chr21-37189251-37189761
-
Data sourse: GSE67783, ENCSR153HNT
-
Cell type: K-562, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1
-
CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TSS,TES
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
90% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"4_Tx": 57%,
"5_TxWk": 42%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: RUNX1, POU2F2, CHD8, ZSCAN5D, CEBPA, FOXA2, TOP2A, SOX2, ZFX, ZNF263, XBP1, PAF1, ZSCAN5A, FOXA1, DDX5, LEO1, HOXB13, ERG, MYC, GRHL3, HIF1A, ZNF532, ATF2, ZNF143, CDK8, SUPT5H, MYB, CREB1, CTCF, RBM22, NUTM1, MNT, AR, ATF7, ZNF605, BRD4, JUND, ZNF766, ZZZ3
- Target gene symbol (double-evidenced CRMs): KCNJ6,TTC3
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 3
- Number of somatic mutations (non-coding): 1
- Related genes and loops