- Basic information
- CohesinDB ID: CDBP00418773
- Locus: chr21-37210849-37210969
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Data sourse: GSE120943, GSE98367
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Cell type: Monocytes, Macrophage
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SMC1
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: TSS,TES
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: False
- Compartment:
90% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 72%,
"5_TxWk": 15%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXO1, NFIA, FOXA1, RXRB, MLL4, KDM3A, HDGF, THAP1, PAX5, TEAD1, LMO2, OCA2, HDAC8, E4F1, SOX5, E2F4, ZNF528, KMT2B, GATAD2A, ZNF263, POU5F1, TOP2A, CTBP1, DUX4, STAT1, SAP130, ERG, NFKB2, EZH1, SMARCA4, RFX1, RCOR1, NR2F6, NFRKB, CD74, CEBPB, HNRNPL, CREB1, GABPB1, ZHX2, MIXL1, GATA2, ZNF644, MXD3, SIX2, FLI1, HCFC1, DRAP1, MXI1, RELB, HCFC1R1, EP400, RUNX1, CEBPA, NKX2-2, HDAC1, IRF3, ZNF707, TET2, SP5, TRIM22, SMARCC1, PRDM10, SMARCB1, GMEB1, TERF1, ZNF331, EVI1, MBD1, STAT5A, ARID2, IKZF5, NFATC3, CBFA2T2, MEF2B, CBX3, ZNF207, CREM, CHD2, PAF1, WT1, MEF2C, JUNB, NEUROD1, ZFP36, BATF, MAF1, SPIB, MED, ELF3, ARID4B, RXR, ZBTB26, NCOR1, HSF1, ILF3, FOSL1, XBP1, KDM4B, PBX2, HNRNPK, ATF3, THRB, ZFP64, RUNX3, ZNF532, CBFB, ZSCAN4, TP63, ZNF467, JMJD1C, ELF1, RBM39, KLF10, SMAD5, JUN, CTCF, L3MBTL4, MNT, DPF2, IRF4, PDX1, RBPJ, TFAP2C, MLX, MTA2, ZBTB48, NBN, ONECUT1, HOMEZ, NKX3-1, MIER3, TERF2, HNRNPH1, VDR, NR3C1, ESRRA, KMT2A, CCAR2, TBL1XR1, GRHL2, EBF3, SSRP1, SMARCA5, NFIL3, CC2D1A, THAP11, ZBTB24, SOX13, ZNF770, ARNT, BACH1, ZNF48, ZEB2, ETV6, PBX3, HMGXB4, TEAD3, U2AF1, TBX5, BCL11A, SP1, ATF7, ASH2L, SMC3, MLLT1, STAG1, TRP47, MTA3, EBF1, MEIS1, MAFF, ZNF580, BCL3, ZKSCAN1, KDM1A, ZIC2, TAL1, ZNF143, AGO2, TP53, ZNF334, NFKB1, BRD2, PHF5A, KAT8, TBX21, EGR1, RB1, RNF2, IKZF2, BRD4, JUND, CUX1, PGR, PATZ1, LEO1, UBTF, TFAP4, SIN3B, MXD4, SMARCE1, KLF6, NFE2L2, SAP30, ESR1, E2F6, TRIM24, GTF2F1, GLIS1, POU2F2, ZSCAN5D, ZSCAN5A, ERG2, TBP, ETS1, MYC, ARID1B, MCRS1, STAT3, IKZF1, INO80, SRSF3, EZH2, ZNF652, PHF8, SPI1, PCBP1, HDAC2, INTS13, GATAD2B, ZNF554, ETV5, BCL6, SIN3A, ERG3, MEF2A, RARA, ZNF384, NFYC, CREBBP, TAF15, SMAD4, CBFA2T3, CDK8, ZEB1, ZMYM3, RBM22, MAFK, NR4A1, REST, BCOR, FOXP1, PPARG, TBL1X, GTF2B, TCF7, RELA, TARDBP, SKIL, MGA, MAX, ZNF592, GFI1B, NR2F1, TCF7L2, KDM5B, PKNOX1, MYOD1, AR, DMAP1, AHR, FOSL2, HMG20A, ZSCAN5C, HMGN3, MEIS2, RBFOX2, ZNF90, NFIC, MECOM, CDX2, KLF5, BCLAF1, TRIM28, RCOR2, MLL, TCF12, EP300, NUTM1, CREB3, SOX6, E2F1, TEAD4, FOXA3, ZNF175, EED, CHD8, BRD1, MYCN, RUNX1T1, MLLT3, GATAD1, ARID3A, ASCL1, ZNF341, RAD21, GRHL3, PROX1, XRCC5, ZNF614, NFE2, TFE3, HBP1, ZNF664, IRF1, SREBF1, ZGPAT, MRTFB, ZIM3, ATF1, PTBP1, SMC1A, MAFG, SIRT6, FIP1L1, ZFX, PCBP2, TWIST1, NSD2, IRF2, RUNX2, GATA4, PBX4, SUPT5H, FOS, TGIF2, MED1, MYB, SCRT2, VEZF1, ZNF3, L3MBTL2, SETDB1, NIPBL, ZBTB7A, PHIP, TCF3, SKI, KLF13, FOXA2, RBBP5, E2F8, ZNF600, MIER2, ZBTB33, CDK9, YY1, ZNF148, SP140, HIF1A, GATA1, HAND2, CEBPG, NCOA3, ZNF687, BHLHE40, NFKBIZ, TAF1, ZBTB40, MYNN, NOTCH3, CLOCK, MAZ, ZNF24
- Target gene symbol (double-evidenced CRMs): HLCS,DYRK1A,KCNJ6
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 1
- Related genes and loops
- Related gene:
ENSG00000159267,
ENSG00000157540,
ENSG00000157542,
- Related loop:
chr21:34350000-34375000~~chr21:37200000-37225000,
chr21:36975000-37000000~~chr21:37200000-37225000,
chr21:37200000-37225000~~chr21:37425000-37450000,
chr21:37200000-37225000~~chr21:37475000-37500000,
chr21:37200000-37225000~~chr21:37525000-37550000,
chr21:37200000-37225000~~chr21:37550000-37575000,
chr21:37200000-37225000~~chr21:37625000-37650000,
chr21:37200000-37225000~~chr21:37650000-37675000,