- Basic information
- CohesinDB ID: CDBP00418776
- Locus: chr21-37223873-37226814
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Data sourse: GSE67783, GSE86191, GSE111913, GSE206145, GSE206145-NatGen2015, ENCSR153HNT, GSE50893, GSE73207
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Cell type: RPE, GM2630, Fibroblast, HCT-116, GM2610, TF-1, RT-112, K-562, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 3% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.900
- Subunit: SA1,Rad21,SA2,SMC3
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TSS,TES
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
90% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"4_Tx": 52%,
"5_TxWk": 16%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXO1, NFIA, XBP1, FOXA1, RBFOX2, LEO1, HDGF, ATF3, NFIC, ZFP64, RUNX3, PRDM1, ZNF532, MORC2, CBFB, MECOM, TP63, MAF, ELF1, TRIM28, RBM39, LMO2, ESR1, TP73, CTCF, TCF12, JUN, NUTM1, KLF1, LMO1, PAX8, E2F6, FOXA3, EED, ZSCAN5D, MYCN, ZNF263, TOP2A, RUNX1T1, POU5F1, ZBTB48, STAT1, ZNF205, ERG2, ERG, OGG1, MYC, SMARCA4, FOXP2, GRHL3, GABPA, STAT3, XRCC5, DNMT3B, STAT5B, KMT2A, SPI1, HDAC2, GATA2, MXD3, FLI1, HEXIM1-CDK9, NFIL3, RUNX1, CIITA, CEBPA, ZFX, ERG3, RARA, NOTCH1, TAF15, GATA4, ARNT, NFIB, ZNF48, SUPT5H, HMGXB4, FOS, TEAD3, TERF1, MYB, SCRT2, SMAD1, ZNF3, EVI1, STAT5A, RBM22, BCL11A, NR4A1, ARID2, REST, TCF3, MBD2, AATF, SMC3, STAG1, MLLT1, TRP47, FOXA2, MEIS1, PAF1, WT1, ZBTB33, MPHOSPH8, KDM1A, YY1, RELA, NEUROD1, JUNB, SP140, GATA3, TAL1, MAX, MAF1, GATA1, AGO2, PLAG1, CBX2, BCL11B, ZNF141, NR2F1, KDM5B, ZNF334, PHOX2B, TBX21, AR, ZBTB16, YAP1, HEXIM1, ZBTB26, HSF1, MYNN, BRD4, SCRT1, NOTCH3, MAZ, AHR
- Target gene symbol (double-evidenced CRMs): VPS26C,DYRK1A,HLCS,KCNJ6
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 105
- Number of somatic mutations (non-coding): 40
- Related genes and loops
- Related gene:
ENSG00000159267,
ENSG00000157538,
ENSG00000157540,
ENSG00000157542,
- Related loop:
chr21:34350000-34375000~~chr21:37200000-37225000,
chr21:36975000-37000000~~chr21:37200000-37225000,
chr21:36975000-37000000~~chr21:37225000-37250000,
chr21:37200000-37225000~~chr21:37425000-37450000,
chr21:37200000-37225000~~chr21:37475000-37500000,
chr21:37200000-37225000~~chr21:37525000-37550000,
chr21:37200000-37225000~~chr21:37550000-37575000,
chr21:37200000-37225000~~chr21:37625000-37650000,
chr21:37200000-37225000~~chr21:37650000-37675000,
chr21:37219712-37222158~~chr21:37563130-37566817,
chr21:37219743-37222181~~chr21:37461893-37464011,
chr21:37219743-37222181~~chr21:37581749-37583648,
chr21:37219743-37222181~~chr21:37608243-37609947,
chr21:37219743-37222181~~chr21:37641599-37643616,
chr21:37219750-37222176~~chr21:37364949-37367653,
chr21:37219750-37222176~~chr21:37580199-37581548,
chr21:37219773-37222194~~chr21:37581619-37583704,
chr21:37219804-37222187~~chr21:37581794-37583687,
chr21:37219804-37222187~~chr21:37641615-37643952,
chr21:37219959-37222123~~chr21:37641546-37643999,
chr21:37219960-37222181~~chr21:37641580-37643713,
chr21:37220147-37222181~~chr21:37562857-37565652,
chr21:37220161-37222184~~chr21:37563560-37566497,
chr21:37225000-37250000~~chr21:37425000-37450000,
chr21:37225000-37250000~~chr21:37475000-37500000,
chr21:37225000-37250000~~chr21:37525000-37550000,
chr21:37225000-37250000~~chr21:37550000-37575000,
chr21:37225000-37250000~~chr21:37575000-37600000,
chr21:37225000-37250000~~chr21:37600000-37625000,
chr21:37225000-37250000~~chr21:37625000-37650000,
chr21:37225000-37250000~~chr21:37650000-37675000,
chr21:37225000-37250000~~chr21:37900000-37925000,