- Basic information
- CohesinDB ID: CDBP00418784
- Locus: chr21-37243152-37244419
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Data sourse: GSE67783, ENCSR153HNT, GSE86191
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Cell type: K-562, HCT-116, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: SA1,Rad21
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
90% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"5_TxWk": 70%,
"7_Enh": 18%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: MEIS2, XBP1, FOXA1, LEO1, PBX2, ATF3, THAP1, ZNF532, MECOM, MITF, TRIM28, ZNF121, ZNF573, ESR1, OCA2, CTCF, NUTM1, TFAP2C, RBPJ, POU2F2, CHD8, ZSCAN5D, ZNF263, MYCN, RUNX1T1, CDK7, POU5F1, ERF, ZBTB48, ZSCAN5A, STAT1, SAP130, DDX5, TBP, ERG, OGG1, ETS1, MYC, SMARCA4, EOMES, RAD21, GRHL3, GABPA, STAT3, XRCC5, DNMT3B, NR2F6, HNRNPH1, VDR, TERF2, CEBPB, EZH2, SPI1, ZNF257, GATA2, FLI1, NFIL3, ETV5, RUNX1, SMC1A, MAFG, SIRT6, ZFX, TET2, ERG3, ZNF770, CREBBP, ZNF384, ARNT, PRDM9, SMAD4, FOXM1, SUPT5H, CDK8, MED1, TEAD3, SCRT2, ZNF3, C11orf30, EVI1, RBM22, MAFK, BCL11A, ARID2, REST, ASH2L, FOXP1, AATF, SMC3, STAG1, TRP47, ZNF283, ZNF316, PAF1, WT1, MAFF, ZNF574, ZBTB33, HOXB13, YY1, RELA, SP140, ZIC2, HIF1A, OTX2, GATA3, TAL1, MAX, ZNF143, AGO2, GATA1, CBX2, NR2F1, TP53, ZNF334, PHOX2B, TBX21, ARID4B, AR, RXR, HEXIM1, MYNN, NCOR1, HSF1, BRD4, MAZ, AHR
- Target gene symbol (double-evidenced CRMs): HLCS,KCNJ6,DYRK1A,VPS26C
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 28
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000159267,
ENSG00000157538,
ENSG00000157540,
ENSG00000157542,
- Related loop:
chr21:36975000-37000000~~chr21:37225000-37250000,
chr21:37225000-37250000~~chr21:37425000-37450000,
chr21:37225000-37250000~~chr21:37475000-37500000,
chr21:37225000-37250000~~chr21:37525000-37550000,
chr21:37225000-37250000~~chr21:37550000-37575000,
chr21:37225000-37250000~~chr21:37575000-37600000,
chr21:37225000-37250000~~chr21:37600000-37625000,
chr21:37225000-37250000~~chr21:37625000-37650000,
chr21:37225000-37250000~~chr21:37650000-37675000,
chr21:37225000-37250000~~chr21:37900000-37925000,