- Basic information
- CohesinDB ID: CDBP00418786
- Locus: chr21-37248968-37249483
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Data sourse: GSE93080, GSE62063
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Cell type: GM12878, Ramos
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: NIPBL,SMC1
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
90% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"5_TxWk": 57%,
"15_Quies": 26%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXO1, SOX2, XBP1, FOXA1, LEO1, HNRNPK, HDGF, NFIC, RUNX3, CHD7, PRDM1, ZNF532, PAX5, TP63, MAF, TEAD1, RBM39, ESR1, MLL, CTCF, TCF12, BAF155, NUTM1, TEAD4, TFAP2C, POU2F2, CHD8, BRD1, NANOG, POU5F1, MYCN, TOP2A, MTA2, ZBTB48, ZSCAN5A, STAT1, DUX4, ZNF563, SRF, ERG, MYC, SMARCA4, RAD21, GRHL3, NKX3-1, ZNF667, NR3C1, STAT5B, KMT2A, CREB1, SPI1, ZNF664, GATA2, SIX2, FLI1, RELB, RUNX1, SMC1A, NKX2-2, SIN3A, ZFX, ZNF770, ERG3, PRDM10, ZNF384, RUNX2, ARNT, ATF2, ZEB2, MED1, TEAD3, MYB, PIAS1, C11orf30, STAT5A, RBM22, USF1, BCL11A, MAFK, ZBTB7A, ARID1A, RBM25, ASH2L, PHIP, TCF3, FOXP1, PRDM6, SMC3, STAG1, MEF2B, FOXA2, EBF1, PAF1, E2F8, WT1, TCF7, HOXB13, KDM1A, YY1, RELA, JUNB, SP140, HIF1A, BATF, TAL1, MAX, GATA1, TLE3, BCL11B, PKNOX1, MYOD1, PHOX2B, AR, NOTCH3, BRD4, CLOCK, MAZ, ZNF316
- Target gene symbol (double-evidenced CRMs): VPS26C,KCNJ6,HLCS,DYRK1A
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 8
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000159267,
ENSG00000157538,
ENSG00000157540,
ENSG00000157542,
- Related loop:
chr21:34350000-34375000~~chr21:37250000-37275000,
chr21:34600000-34625000~~chr21:37250000-37275000,
chr21:36950000-36975000~~chr21:37250000-37275000,
chr21:36975000-37000000~~chr21:37225000-37250000,
chr21:36975000-37000000~~chr21:37250000-37275000,
chr21:37050000-37075000~~chr21:37250000-37275000,
chr21:37150000-37175000~~chr21:37250000-37275000,
chr21:37225000-37250000~~chr21:37425000-37450000,
chr21:37225000-37250000~~chr21:37475000-37500000,
chr21:37225000-37250000~~chr21:37525000-37550000,
chr21:37225000-37250000~~chr21:37550000-37575000,
chr21:37225000-37250000~~chr21:37575000-37600000,
chr21:37225000-37250000~~chr21:37600000-37625000,
chr21:37225000-37250000~~chr21:37625000-37650000,
chr21:37225000-37250000~~chr21:37650000-37675000,
chr21:37225000-37250000~~chr21:37900000-37925000,
chr21:37250000-37275000~~chr21:37350000-37375000,
chr21:37250000-37275000~~chr21:37375000-37400000,
chr21:37250000-37275000~~chr21:37425000-37450000,
chr21:37250000-37275000~~chr21:37450000-37475000,
chr21:37250000-37275000~~chr21:37550000-37575000,
chr21:37250000-37275000~~chr21:37575000-37600000,
chr21:37250000-37275000~~chr21:37625000-37650000,
chr21:37250000-37275000~~chr21:37650000-37675000,
chr21:37250000-37275000~~chr21:37850000-37875000,
chr21:37250000-37275000~~chr21:38225000-38250000,
chr21:37250000-37275000~~chr21:38250000-38275000,