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Basic information

CohesinDB ID: CDBP00418798

Locus: chr21-37275975-37276941

Data sourse: GSE206145-NatGen2015, GSE67783, ENCSR153HNT, GSE86191

Cell type: K-562, Fibroblast, HCT-116, HSPC

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 1% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.956

Subunit: SA1,Rad21,SA2

CTCF binding site: CTCF CTCF motif: False

Genomic location: Intergenic

3D genome

TAD boundary: Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: False ChIA-PET loops: True

Compartment: 94% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): False

Chromatin annotation: "15_Quies": 69%, "14_ReprPCWk": 22%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: RUNX1, SKI, CHD8, MAFG, CEBPA, MTA3, ZFX, CTBP1, XBP1, ZBTB48, ZSCAN5A, ZNF770, MEF2C, RELA, ZNF384, ATF3, RAD21, HIF1A, ATF4, MECOM, SMARCE1, ZNF143, CDK8, NFE2, CEBPB, JMJD1C, DIDO1, RBM39, ZMYM3, NR2F1, ZNF3, C11orf30, USF2, CTCF, TCF12, USF1, SPI1, BCL11A, AR, DPF2, GATA2, ZBTB7A, RBM25, TRIM24, ATF7, BRD4, BCOR, MAZ, ZNF528, KMT2B, ZNF316

Target gene symbol (double-evidenced CRMs): TTC3

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 3

Related genes and loops

Related gene: ENSG00000182670,

eachgene

Deatailed information for cohesin site CDBP00418798