- Basic information
- CohesinDB ID: CDBP00418803
- Locus: chr21-37284037-37284878
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Data sourse: GSE138405, GSE67783, ENCSR153HNT, GSE86191
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Cell type: K-562, Hela-Kyoto, HCT-116, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.956
- Subunit: SA1,Rad21,SMC3
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
94% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 68%,
"14_ReprPCWk": 27%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXO1, TRP47, POU2F2, SMC1A, BRD1, ZNF263, MYCN, RUNX1T1, KDM4C, ZFX, XBP1, ZBTB48, WT1, TET2, ZBTB33, DDX5, ERG, YY1, RELA, TARDBP, ATF3, SP140, GRHL3, APC, XRCC5, TEAD3, TEAD1, EZH2, OCA2, CTCF, AR, ZNF324, NOTCH3, BRD4, ZNF490, ZNF528, AATF, MAZ, SMC3, STAG1, AHR
- Target gene symbol (double-evidenced CRMs): TTC3
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 15
- Related genes and loops