- Basic information
- CohesinDB ID: CDBP00418804
- Locus: chr21-37285772-37286514
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Data sourse: GSE67783, ENCSR000BKV
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Cell type: K-562, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1,Rad21
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
94% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 74%,
"14_ReprPCWk": 23%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: CHD8, ZSCAN5D, FOXA2, KDM4C, ZFX, XBP1, ZNF317, WT1, ZBTB48, FOXA1, ZNF770, ZBTB33, PBX2, SP4, PRDM10, RELA, OGG1, EZH1, MYC, SP140, HIF1A, GATA3, ZNF189, MAF1, XRCC5, MAX, ZNF143, IKZF1, GATA1, CEBPB, ELF1, SCRT2, LMO2, TP53, PKNOX1, CTCF, SP1, ZBTB7A, ATF7, NOTCH3, BRD4, JUND, MAZ, ZNF528, SMC3, TFAP2C
- Target gene symbol (double-evidenced CRMs): TTC3
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 6
- Related genes and loops