- Basic information
- CohesinDB ID: CDBP00418808
- Locus: chr21-37294679-37295071
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Data sourse: ENCSR230ZWH, ENCSR153HNT, ENCSR917QNE
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Cell type: K-562, Liver
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1,Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
94% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 70%,
"14_ReprPCWk": 17%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: CHD8, SMARCA2, ZNF496, POU5F1, FOXA1, CDK9, ZNF580, SMARCC1, RELA, ETS1, MYC, RAD21, GRHL3, HIF1A, RXRA, GATA3, GABPA, TAL1, ZNF449, CBX2, TEAD3, TEAD1, ELF1, MYB, NR2F2, ETV1, SCRT2, EZH2, LMO2, TP53, WDR5, SP1, LMO1, REST, FLI1, RNF2, BRD4, ZNF808, SCRT1, MRTFB, TFAP2C
- Target gene symbol (double-evidenced CRMs): TTC3
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 1
- Related genes and loops