- Basic information
- CohesinDB ID: CDBP00418810
- Locus: chr21-37299004-37300165
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Data sourse: GSE206145-NatGen2015, GSE67783, ENCSR153HNT
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Cell type: K-562, Fibroblast, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: SA1,Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
94% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 78%,
"14_ReprPCWk": 16%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX1, PGR, POU2F2, SMC1A, ZSCAN5D, ZNF263, MYCN, CHD8, ZFX, CTBP1, XBP1, ZBTB48, ZSCAN5A, WT1, ZNF770, PBX2, ETV5, YY1, RELA, ATF3, RUNX2, ZFP64, THAP1, SP140, ZFP36, GRHL3, ZNF429, HIF1A, PRDM9, ZNF143, IKZF1, TERF2, PLAG1, NR3C1, MYOG, ZNF573, TP53, ESR1, OCA2, MYOD1, CTCF, BCL11A, ARRB1, EGLN2, SIX2, NOTCH3, SCRT1, BRD4, SMC3, STAG1, RBPJ
- Target gene symbol (double-evidenced CRMs): TTC3
- Function elements
- Human SNPs: 3-hydroxy-1-methylpropylmercapturic_acid_levels_in_smokers
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 3
- Related genes and loops