Deatailed information for cohesin site CDBP00418829

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  • Basic information
  • CohesinDB ID: CDBP00418829
  • Locus: chr21-37349570-37349924
  • Data sourse: GSE85526, GSE111913, ENCSR153HNT
  • Cell type: K-562, RT-112, HEKn
  • DNA Sequence of binding site: UCSC hg38
  • Cohesin category
  • Peak occupancy ratio: 1% samples have this site.
  • Cell specificity (0: conserved, 1: cell type specific): 0.967
  • Subunit: SA1,SA2,SMC1
  • CTCF binding site: non-CTCF CTCF motif: False
  • Genomic location: Intragenic
  • 3D genome
  • TAD boundary: Boundary
  • Chromatin hubs: Hub
  • Hi-C loops: True Hi-ChIP loops: False ChIA-PET loops: True
  • Compartment: 94% Hi-C samples shows Compartment A
  • Cis-regulatory elements
  • Enhancer (Fantom5): non-Enhancer
  • Super enhancer (SEdb): True
  • Chromatin annotation: "9_Het": 58%, "15_Quies": 32%,
    Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
  • Co-bound Transcriptional factors: CBX5, ZNF660, ZSCAN5C, MEIS2, FOXA1, PBX2, ZNF529, HDGF, ATF3, ZNF362, ZBTB44, PRDM1, ZNF189, SMARCE1, ZNF320, ZNF467, CDX2, JMJD1C, ZNF629, THRAP3, TRIM28, ESR1, TP73, ZNF561, ZNF577, CTCF, JUN, EP300, E4F1, MNT, DPF2, TRIM24, IRF4, SOX6, RAD51, ZNF567, DDX20, ZNF528, SMC1, ZNF280A, TEAD4, ZNF555, EHMT2, PDX1, GLIS1, XRCC3, POU5F1, ID3, CTBP1, ZNF317, ASH1L, MTA2, ZSCAN21, STAT1, BAHD1, NBN, ZNF224, ERG, PAX6, ZNF585B, MIER1, ZNF341, ZNF626, MYC, SMARCA4, ZNF2, ARID1B, RAD21, DNMT1, FOXK2, GABPA, STAT3, LEF1, RCOR1, ZNF639, NR2F6, NR3C1, CEBPB, ZNF669, KLF8, GABPB1, SPI1, IRF1, HDAC2, GATA2, SMARCA5, EP400, ZNF554, CC2D1A, RUNX1, CBX1, SMC1A, CEBPA, HDAC1, LDB1, ERG3, ZNF549, SMARCC1, IRF2, ZBTB2, ZNF384, ZNF133, BRD9, GATA4, ZNF184, SP3, ARNT, ZEB2, ZNF518A, FOXM1, ZNF10, FOS, CDK8, NR2C1, MED1, ZEB1, PML, ZXDB, ZNF558, ZNF680, PIAS1, ZNF331, KLF9, SETDB1, USF1, BCL11A, REST, RBM25, ATF7, HOXA9, AFF1, BCOR, SMC3, STAT2, MLLT1, NFATC3, ZNF394, ZNF816, CBX3, MTA3, FOXA2, MEIS1, E2F8, ZSCAN16, ZNF30, ZNF574, ZBTB33, MEF2C, CDK9, HOXB13, ZNF318, MPHOSPH8, KDM1A, YY1, ZNF510, CHAMP1, ZNF155, ZNF610, ZFP36, SKIL, HIF1A, TAL1, MAX, ZNF143, MTA1, KLF4, SP7, NR2F2, ZNF512, NR2F1, TP53, PKNOX1, ZFP28, ZBTB40, ZNF324, EGLN2, ZBTB42, ZNF280D, RNF2, NCOR1, BRD4, ILF3, ZSCAN23, ZNF24, ZFP42, ZNF316
  • Target gene symbol (double-evidenced CRMs): .
  • Function elements
  • Human SNPs: .
  • Number of somatic mutations (coding): 0
  • Number of somatic mutations (non-coding): 2
  • Related genes and loops
  • Related gene:
  • Related loop: chr21:36950000-36975000~~chr21:37350000-37375000, chr21:36975000-37000000~~chr21:37350000-37375000, chr21:37150000-37175000~~chr21:37350000-37375000, chr21:37250000-37275000~~chr21:37350000-37375000, chr21:37325000-37350000~~chr21:38225000-38250000, chr21:37350000-37375000~~chr21:37450000-37475000, chr21:37350000-37375000~~chr21:37625000-37650000, chr21:37350000-37375000~~chr21:37650000-37675000, chr21:37350000-37375000~~chr21:37900000-37925000, chr21:37350000-37375000~~chr21:38275000-38300000,
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