- Basic information
- CohesinDB ID: CDBP00418842
- Locus: chr21-37390571-37390871
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Data sourse: GSE206145-NatGen2015, GSE111913, GSE86191
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Cell type: RT-112, Fibroblast, HCT-116
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: Rad21,SMC1
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
94% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"5_TxWk": 70%,
"7_Enh": 20%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: CHD8, ZSCAN5D, POU5F1, EBF1, ZFX, ZNF600, ZBTB17, ZBTB48, FOXA1, HLF, ZNF770, LEO1, ERG, RELA, HDGF, ZNF384, ZNF362, HIF1A, ZNF532, OTX2, ZNF189, TAL1, ZNF143, SUPT5H, SNRNP70, TEAD3, ZNF573, PIAS1, PKNOX1, CTCF, RBM22, AR, ZBTB26, BRD4, PHIP, CLOCK, PRDM6, NFIL3
- Target gene symbol (double-evidenced CRMs): DYRK1A,TTC3,VPS26C
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 7
- Number of somatic mutations (non-coding): 0
- Related genes and loops