- Basic information
- CohesinDB ID: CDBP00418844
- Locus: chr21-37396832-37397053
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Data sourse: ENCSR000BLD, ENCSR000ECE, GSE105028, ENCSR000BKV
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Cell type: K-562, H1-hESC, H9-hESC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: Rad21
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
94% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"5_TxWk": 41%,
"7_Enh": 41%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXO1, PGR, SOX2, XBP1, FOXA1, SUZ12, LEO1, ATF3, ZFP64, ZNF532, MZF1, MITF, TEAD1, TRIM28, ESR1, CTCF, ZNF577, BAF155, NUTM1, E2F1, ZNF528, TFAP2C, POU2F2, CHD8, BRD1, POU5F1, MYCN, TOP2A, ZBTB48, ZSCAN5A, DUX4, ERG, MYC, SMARCA4, HOMEZ, RAD21, GRHL3, NKX2-1, GABPA, STAT3, NKX3-1, HNRNPH1, NR3C1, CEBPB, KMT2A, EZH2, GRHL2, FEZF1, ZNF652, TRPS1, SPI1, HDAC2, GATA2, MXD3, SMARCA5, ZNF490, ZNF766, HEXIM1-CDK9, ETV5, RUNX1, SMC1A, CEBPA, LDB1, ZFX, POU4F2, ZNF534, PCBP2, ZFP37, ERG3, ZNF35, ZNF384, RUNX2, CDK6, GATA4, GR, ARNT, ATF2, PRDM9, HMBOX1, SUPT5H, CDK8, CHD1, TEAD3, TERF1, MYB, SCRT2, PIAS1, RBM22, USF1, BCL11A, REST, ZNF479, PHIP, TCF3, FOXP1, SMC3, STAG1, PPARG, FOXA2, TBL1X, NFATC1, PAF1, ZNF600, WT1, ZBTB33, HOXB13, ZKSCAN1, YY1, RELA, NEUROD1, TCF4, HIF1A, OTX2, TAL1, MAX, GATA1, AGO2, ZNF143, KLF4, SP7, NEUROG2, TP53, ZNF334, MYOD1, PHOX2B, AR, ZBTB26, NOTCH3, BRD4, SCRT1, MAZ, AHR
- Target gene symbol (double-evidenced CRMs): VPS26C,TTC3,DYRK1A
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops