- Basic information
- CohesinDB ID: CDBP00418850
- Locus: chr21-37412425-37413752
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Data sourse: GSE165895, GSE206145-NatGen2015, ENCSR000BLY, ENCSR000ECS
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Cell type: HeLa-S3, Fibroblast, SK-N-SH, HFFc6
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 3% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.956
- Subunit: SA1,Rad21,SMC1,SA2,Mau2,SMC3
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: False
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
94% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"7_Enh": 47%,
"5_TxWk": 42%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXO1, PGR, XBP1, FOXA1, ZFHX2, HDGF, ATF3, RUNX3, PRDM1, ZNF532, ATF4, SMARCE1, JMJD1C, TEAD1, BCLAF1, TRIM28, ZNF573, ELF1, ESR1, PITX3, CTCF, TCF12, EP300, NUTM1, E4F1, DPF2, TRIM24, IRF4, DDX20, TEAD4, ZNF92, GATAD2A, EHMT2, EED, POU2F2, POU5F1, CTBP1, ZSCAN21, ZBTB17, ZBTB48, STAT1, ZNF205, SAP130, ERG2, HNF4G, ERG, OGG1, NFKB2, MYC, SMARCA4, ARID1B, RAD21, HOMEZ, GRHL3, RXRA, FOXK2, STAT3, XRCC5, NKX3-1, IKZF1, RCOR1, NR2F6, VDR, NR3C1, CEBPB, ESRRA, KMT2A, FEZF1, ZKSCAN5, ELF4, SPI1, HDAC2, GATA2, ZNF644, FLI1, NR2C2, RELB, MRTFB, EP400, RUNX1, ZNF585A, BCL6, MAFG, CEBPA, HDAC1, ZFX, ZNF770, ERG3, SMARCC1, PRDM10, MEF2A, CREBBP, ZNF35, NOTCH1, RARA, ZNF384, RUNX2, CDK6, DAXX, ZEB2, HMBOX1, SMAD4, ETV6, ZNF10, SUPT5H, CDK8, CHD1, TEAD3, ZMYM3, PIAS1, TBX5, RBM22, SP1, BCL11A, HNF4A, RBM25, HOXA9, PHIP, BCOR, PRDM6, MLLT1, MEF2B, PPARG, FOXA2, MTA3, HDAC6, PAF1, NFATC1, ZNF600, ZNF692, ZSCAN16, GTF2B, MEF2C, ZBTB33, CDK9, HOXB13, BCL3, KDM1A, YY1, RELA, JUNB, HIF1A, SKIL, OTX2, GATA3, ZNF519, BATF, MAX, SPIB, GATA1, ZNF223, CEBPG, SP7, NR2F2, NR2F1, TP53, ZNF334, PHOX2B, TBX21, AR, EGLN2, ZNF366, ZBTB42, EGR1, IKZF2, BRD4, JUND, NOTCH3, ZNF316, FOSL2
- Target gene symbol (double-evidenced CRMs): DYRK1A
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 7
- Number of somatic mutations (non-coding): 0
- Related genes and loops