- Basic information
- CohesinDB ID: CDBP00418863
- Locus: chr21-37437345-37438224
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Data sourse: GSE206145-NatGen2015
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Cell type: Fibroblast
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: Mau2,SA1,Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: non-Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
94% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"5_TxWk": 67%,
"7_Enh": 23%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXO1, PGR, SOX2, MEIS2, XBP1, PATZ1, FOXA1, PBX2, ZFHX2, HDGF, MEN1, LYL1, ATF3, ZNF362, ZBTB44, PRDM1, RUNX3, ZNF532, ZNF189, SFPQ, ZNF629, MYOG, ELF1, TRIM28, ESR1, OCA2, PITX3, ZNF561, CTCF, JUN, TCF12, EP300, NUTM1, E4F1, BAF155, LMO1, MNT, DPF2, IRF4, RFX5, E2F4, E2F1, TEAD4, KMT2B, GTF2F1, PDX1, RBPJ, EED, GLIS1, POU2F2, NANOG, CHD8, POU5F1, MYCN, RUNX1T1, TOP2A, ZSCAN21, ZBTB17, DUX4, ZBTB48, STAT1, ZNF317, ZNF563, SRF, BAHD1, ARID3A, ERG2, TBP, ERG, HOXC5, ASCL1, ZNF341, ONECUT1, MYC, SMARCA4, RFX1, ZNF2, RAD21, FOXP2, GRHL3, PROX1, FOXK2, GABPA, STAT3, NKX3-1, RCOR1, NFE2, ZNF667, NR3C1, CEBPB, KMT2A, CREB1, FOXK1, EZH2, FEZF1, GRHL2, ZNF652, EBF3, SPI1, IRF1, HDAC2, GATA2, ZNF146, FLI1, MXI1, ZNF766, MRTFB, NFYB, ZNF554, ATF1, RUNX1, ZNF585A, CIITA, NKX2-2, IRF3, LDB1, AFF4, POU4F2, ERG3, ZNF18, PRDM10, TWIST1, CREBBP, ZNF35, NOTCH1, RUNX2, CDK6, GATA4, OSR2, GR, SP3, ARNT, HMBOX1, NFYA, ZEB2, PBX3, NCAPH2, SP2, SUPT5H, FOS, ZNF10, MED1, CEBPD, MYB, SCRT2, PIAS1, SMAD1, C11orf30, SETDB1, TBX5, ZNF22, RBM22, NUP98-HOXA9, SP1, BCL11A, USF1, NKX2-5, REST, RBM25, ZSCAN31, POU2F3, HOXA9, PHIP, TCF3, PRDM6, ZNF394, PAX7, AGO1, PPARG, FOXA2, CBX3, CREM, CHD2, NFATC1, MEIS1, ZNF600, ZSCAN16, PAF1, ZNF692, ZNF30, GTF2B, FOXF1, ZNF574, ZBTB33, ZNF823, CDK9, HOXB13, KDM1A, RELA, NEUROD1, JUNB, AHR, ZNF610, ZIC2, HIF1A, TCF4, OTX2, GATA3, TAL1, MAX, GATA1, ZNF143, HAND2, TLE3, BCL11B, SP7, GFI1B, NR2F2, NEUROG2, TP53, PKNOX1, ZNF334, ZSCAN22, MYOD1, ZNF140, PHOX2B, EGR2, BRD2, ZNF843, AR, PAX3-FOXO1, TAF1, ZNF324, EGLN2, ZBTB42, NOTCH3, BRD4, JUND, ILF3, SCRT1, CUX1, ZNF440, TBX2, ZZZ3, ZNF316
- Target gene symbol (double-evidenced CRMs): DYRK1A,VPS26C,TTC3
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 22
- Number of somatic mutations (non-coding): 0
- Related genes and loops