- Basic information
- CohesinDB ID: CDBP00418884
- Locus: chr21-37483561-37484153
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Data sourse: ENCSR000BLD, GSE67783, ENCSR000BLY, GSE105028, GSE206145-NatGen2015, ENCSR153HNT
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Cell type: H1-hESC, Fibroblast, SK-N-SH, K-562, HSPC, H9-hESC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.933
- Subunit: SA1,Rad21,SA2
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: non-Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
94% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"5_TxWk": 44%,
"4_Tx": 42%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: ZNF394, CHD8, ZFX, POU4F2, ZSCAN16, ZNF600, WT1, ZBTB33, LEO1, ZNF18, YY1, CREBBP, CDK6, EOMES, RAD21, CHD7, ZNF532, NKX2-1, SUPT5H, ZNF121, OCA2, C11orf30, RBM22, BCL11A, NUTM1, BRD4, ZNF528, STAG1
- Target gene symbol (double-evidenced CRMs): TTC3,KCNJ6,VPS26C,DYRK1A,HLCS
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 66
- Number of somatic mutations (non-coding): 6
- Related genes and loops