- Basic information
- CohesinDB ID: CDBP00418885
- Locus: chr21-37485153-37485383
-
Data sourse: ENCSR000EHX, ENCSR000BLY
-
Cell type: SK-N-SH
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: Rad21
-
CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: non-Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
94% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"5_TxWk": 66%,
"4_Tx": 23%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: RUNX1, FOXO1, PGR, SMC1A, PPARG, FOXA2, CEBPA, PAF1, SOX2, ZFX, XBP1, ZSCAN16, ZBTB48, DUX4, FOXA1, HOXB13, ERG, RELA, ZNF384, OGG1, JUNB, EZH1, CDK6, SMARCA4, MYC, GATA4, RAD21, PRDM1, GRHL3, HIF1A, ZNF532, ARNT, GABPA, SMARCE1, PAX5, TAL1, ZNF10, SUPT5H, ZNF143, MITF, GATA1, AGO2, NRIP1, MED1, STAT3, CEBPG, CEBPB, NCOA3, EZH2, SMAD5, OCA2, C11orf30, PHOX2B, JUN, RBM22, CTCF, SPI1, NUTM1, BCL11A, ZNF664, AR, PAX3-FOXO1, GATA2, IRF4, NCOR1, HOXA9, BRD4, SCRT1, FOXP1, ZNF528, SMC3, ZNF554, ZZZ3, STAG1, RBPJ
- Target gene symbol (double-evidenced CRMs): KCNJ6,HLCS,TTC3,VPS26C,DYRK1A
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops