- Basic information
- CohesinDB ID: CDBP00418886
- Locus: chr21-37485921-37486191
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Data sourse: GSE62063, ENCSR879KXD
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Cell type: K-562, Ramos
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: NIPBL,Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: non-Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
94% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"5_TxWk": 81%,
"4_Tx": 17%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX1, FOXO1, PGR, SMC1A, PPARG, FOXA2, CEBPA, PAF1, SOX2, ZFX, XBP1, ZSCAN16, ZBTB48, DUX4, FOXA1, HOXB13, ERG, RELA, ZNF384, OGG1, JUNB, EZH1, CDK6, SMARCA4, MYC, GATA4, RAD21, PRDM1, GRHL3, HIF1A, ZNF532, ARNT, GABPA, SMARCE1, PAX5, TAL1, ZNF10, SUPT5H, ZNF143, MITF, GATA1, AGO2, NRIP1, MED1, STAT3, CEBPG, CEBPB, NCOA3, EZH2, SMAD5, OCA2, C11orf30, PHOX2B, JUN, RBM22, CTCF, SPI1, NUTM1, BCL11A, ZNF664, AR, PAX3-FOXO1, GATA2, IRF4, NCOR1, HOXA9, BRD4, SCRT1, FOXP1, ZNF528, SMC3, ZNF554, ZZZ3, STAG1, RBPJ
- Target gene symbol (double-evidenced CRMs): VPS26C,TTC3,HLCS,DYRK1A,KCNJ6
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops